PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0030ss00170.1
Common NameLR48_Vigan05g209700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 222aa    MW: 24879.2 Da    PI: 6.5074
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0030ss00170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-1849100156
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g+
  Vang0030ss00170.1  49 PVYHGVRMRN-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALSIKGH 100
                        68*****998.**********843...6************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.9E-1349100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-3150108IPR001471AP2/ERF domain
SMARTSM003803.7E-3550113IPR001471AP2/ERF domain
PROSITE profilePS5103222.18150107IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-2150108IPR016177DNA-binding domain
PRINTSPR003671.9E-95162IPR001471AP2/ERF domain
CDDcd000182.27E-3151109No hitNo description
PRINTSPR003671.9E-97389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MIDTPCHKTP GSSTNNPSTS KPHKTETPKQ SKTQKQSKLK RNRDPTKHPV YHGVRMRNWG  60
KWVSEIREPR KKSRIWLGTF ATPEMAARAH DVAALSIKGH TAVLNFPNLV NMLPRPVTCA  120
PRDIQVAAAE AAAMVEFDRE CSDEAESSEL SEIVELPNIE ESLESVESRS EFAFIDSVDS  180
WLYPPMAVGS ICEMMVGEDE CGFFHFQTDH QKTCSVQFQL F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1651111667ATERF1
3gcc_A3e-1651111667ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150657.11e-136hypothetical protein PHAVU_005G170600g
SwissprotQ9LYD32e-59DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0S3SFM31e-167A0A0S3SFM3_PHAAN; Uncharacterized protein
TrEMBLA0A0L9UPJ91e-167A0A0L9UPJ9_PHAAN; Uncharacterized protein
STRINGGLYMA13G43210.11e-109(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-52ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]